Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs41309844 chr9:123781647 A/C 2.7E-5 503 31.7 31.47 21.97 KM Plot
THCA rs41309850 chr9:123778688 A/C 2.8E-5 500 31.7 31.42 21.97 KM Plot
THCA rs41309856 chr9:123776390 G/C 2.77E-5 502 31.7 31.42 21.97 KM Plot
THCA rs41309860 chr9:123776007 A/AT 2.7E-5 502 31.62 31.47 21.97 KM Plot
THCA rs41309872 chr9:123771493 T/C 2.72E-5 503 31.7 31.42 21.97 KM Plot
THCA rs4144383 chr13:108843486 C/T 6.93E-7 503 26.25 31.83 31.45 KM Plot
THCA rs41463544 chr6:80700425 A/T 3.19E-5 503 18.33 30.33 31.73 KM Plot
THCA rs4239655 chr20:47246589 T/A 0 503 31.47 32.93 7.77 KM Plot
THCA rs4270469 chr3:139263101 T/A 4.35E-10 502 31.47 33.97 19.32 KM Plot
THCA rs4283951 chr7:32804950 A/T 0.000127 503 33.7 31.47 31.47 KM Plot
THCA rs4292715 chr8:1182941 C/G 3.66E-5 498 17.17 31.4 31.73 KM Plot
THCA rs4296598 chr3:97200411 C/T 8.49E-7 502 31.43 34.03 29.17 KM Plot
THCA rs4305699 chr6:166787243 A/G 9.93E-5 503 31.45 31.87 33.27 KM Plot
THCA rs4353212 chr10:81652072 A/G 2.12E-9 496 31.73 31.43 14.52 KM Plot
THCA rs4367542 chr8:8396737 C/G 0.000134 503 31.47 32.17 24.28 KM Plot